Replaces manual plotting scripts for quality control and normalization of high-throughput sequencing data. It provides a comprehensive suite for BAM-to-BigWig conversion and heat map visualization.
Tech Stack
PythonBiology & Biotechnology
Why deepTools?
• Highly customizable plots
• Efficient BigWig handling
• Strong community support
Limitations
• Python dependency hell
• Memory intensive for large files
• CLI can be intimidating
2/26/2026
Last Update
220
Forks
178
Issues
Other
License
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