A software package for analyzing high-throughput sequencing data with a primary focus on variant discovery. It implements the Best Practices workflow for germline and somatic mutation calling.
Tech Stack
JavaBiology & Biotechnology
Why gatk?
• Gold standard reliability
• Extensive documentation
• Broad functional scope
Limitations
• High memory consumption
• Java runtime overhead
• Complex command syntax
3/5/2026
Last Update
624
Forks
1,430
Issues
Other
License
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