Replaces basic VCF comparison scripts with a standardized haplotype-aware benchmarking suite. Uses sophisticated graph-based alignment to resolve complex variant representations and provide precision-recall metrics.
Tech Stack
C++Biology & Biotechnology
Why hap.py?
• Handles complex indels correctly
• Industry standard for benchmarking
• Extensive stratification options
Limitations
• Difficult to install (Docker recommended)
• High memory usage for large VCFs
• Requires specific reference formatting
2/26/2026
Last Update
133
Forks
120
Issues
Other
License
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