Replaces standard assemblers for generating haplotype-resolved de novo genome assemblies from HiFi reads. It produces phased assemblies without requiring parental data by utilizing a specialized graph-based approach.
Tech Stack
C++Biology & Biotechnology
Why hifiasm?
• Haplotype-resolved output
• Extremely high contiguity
• Supports Hi-C integration
Limitations
• High RAM requirements
• Optimized only for HiFi reads
• No graphical interface
3/4/2026
Last Update
108
Forks
578
Issues
MIT
License
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