Replaces fragmented Hi-C analysis scripts with a unified one-click pipeline for 3D genomics. Automates alignment, loop calling, and contact map generation using a high-performance Java-based core.
Tech Stack
ShellBiology & Biotechnology
Why juicer?
• Standardized .hic output format
• High-resolution loop detection
• Supports multiple species
Limitations
• High computational requirements
• Complex dependency chain
• Steep learning curve for CLI
2/5/2026
Last Update
194
Forks
115
Issues
MIT
License
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