Replaces proprietary germline and somatic variant calling pipelines for whole-genome sequencing. Built on Nextflow to ensure full reproducibility and scalability across cloud and HPC environments.
Tech Stack
NextflowBiology & Biotechnology
Why sarek?
• NF-Core certified pipeline
• Supports multiple variant callers
• Highly portable across clouds
Limitations
• Requires Nextflow knowledge
• Resource intensive
• Complex configuration
3/3/2026
Last Update
526
Forks
274
Issues
MIT
License
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