Replaces complex multi-step variant calling pipelines for bacterial and viral genomes. Automates read mapping and SNP/indel identification into a single, rapid command-line execution.
Tech Stack
PerlBiology & Biotechnology
Why snippy?
• Extremely fast turnaround
• Handles core genome alignment
• Simple installation via Conda
Limitations
• Not suitable for polyploid organisms
• Perl-based architecture
• Limited to reference-based calling
3/5/2026
Last Update
121
Forks
219
Issues
GPL-2.0
License
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